List of bioinformatics packages in fink

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  • amigos - Outputs tables of torsion angles from RNA PDB files
  • arb - Phylogeny and sequence data management
  • babel - Molecular modelling file converter
  • clustalw - ClustalW Multiple Sequence Alignment Program
  • emboss - Molecular Biology Open Software Suite
  • emboss-kaptain - Kaptain grammars for EMBOSS
  • freehelix - Nucleic acid helix analysis program
  • ghemical - Molecular modelling environment for GNOME
  • gopenmol - Molecular visualization and analysis program
  • hmmer - Profile HMMs for biological sequence analysis
  • infernal - RNA secondary structure alignments
  • mead - Molecular electrostatics calculation
  • mmtk - Python-based Molecular Modelling Toolkit
  • namot - Nucleic Acid MOdelling Tool
  • openbabel - Project designed to pick up where Babel left off
  • phase - PH ylogenetics And Sequence Evolution Package
  • phylip - Package of programs for inferring phylogenies
  • pymol - Molecular graphics system [Also available as a native OS X program]
  • python-biopython - Python tools for computational biology
  • rasmol - Molecular graphics visualisation tool
  • rasmol-8bit - Molecular graphics visualisation tool
  • rnabob - Fast RNA motif/pattern searcher
  • rnamotif - RNA database search for secondary structure motifs
  • rsearch - RNA database search with structure queries
  • scientificpython - Python modules useful for scientific computing
  • scientificpython-py23 - Python modules useful for scientific computing
  • scipy-py22 - Scientific tools for Python2.2
  • scipy-py23 - Scientific tools for Python
  • snns - Software Simulator for Neural Networks
  • tcoffee - T-Coffee Multiple Sequence Alignment Program
  • tinker - TINKER molecular modeling software package
  • xdrawchem - Chemical drawing
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