Crystallography on OS X

From OS X Scientific Computing

Contents 1 Crystallography Programs 2 Making OS X a Viable Unix Platform 3 64-bit on 10.5 and 10.6 4 Upgrading to 10.6 Snow Leopard 5 Upgrading to 10.7 Lion 6 Other Links of Interest

Crystallography Programs

1. Installing CCP4 on OS X
2. Installing CNS on OS X
3. Installing Data Processing Software on OS X
4. Installing Phenix and CCTBX on OS X
5. Installing Shelx on OS X
6. Installing Sharp on OS X
7. Installing EDEN on OS X
8. Installing Solve on OS X
9. Installing USF programs automatically on OS X
10. Installing Molecular Graphics Software on OS X
    1. Installing Coot on OS X
    2. Installing O on OS X
    3. Installing PyMol on OS X

Using Fink to install pre-compiled crystallography software very quickly

1. getting your fink installation to use packages that I have pre-compiled
   1. Manually install one or two packages
      1. Manually install coot binary
      2. Manually install CCP4 fink debian packages
      3. Manually install a binary CNS package

Molecular Visualization

1. Molecular Graphics Display Programs on OS X
   1. O
   2. MacPyMol
   3. Coot
   4. others

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Making OS X a Viable Unix Platform

• X-windows

• Developer Tools

• Fink Package Manager

• Use Fink to Install Crystallography Software

• A note on user shells

• OS X Unix links

• OSX Unix Bulletin Board

• TextMate and iTerm

• ZSH on OS X

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64-bit on 10.5 and 10.6

• 64-bit Fink for 10.5 and 10.6

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Upgrading to 10.6 Snow Leopard

• Snow Leopard upgrade notes

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Upgrading to 10.7 Lion

• Lion upgrade notes

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Other Links of Interest

• Various Useful Programs

• Crystallography Web-Sites

• Searchable Email Archives

• Backing up and Cloning Disks

• ZSH on OS X

• NMR on OS X

• W. G. Scott Research Group